HelixMatch

RAG · ClinicalTrials.gov · ICD-10

Match patients to trials before the window closes.

Pharmaceutical companies lose billions waiting on enrollment. HelixMatch reads doctor's notes, extracts phenotype, and ranks recruiting studies against inclusion and exclusion criteria.

Patient 1042 · NSCLC
ELIGIBLE 94

64F · Stage IV adenocarcinoma · EGFR wt · PD-L1 62% · ECOG 1

NCT06758401

Pfizer · Sigvotatug + Pembro

94

NCT07222566

Pfizer · PF-08634404

88

NCT06288100

Flatiron network basket

71

10,247

synthetic notes parsed

92%

criteria-level accuracy

24 ms

p50 vector retrieve

4

target operators

The problem

Trial criteria are precise. Patient records are not.

Eligibility lives in 20-page protocols. The signal lives in free-text notes — histology, ECOG, a casually mentioned brain met. HelixMatch treats that as a retrieval problem: extract, embed, cross-reference.

Global development

Pfizer

Surface eligible patients for oncology, SCD, AD, and metabolic protocols before sites stall on enrollment.

I&I and renal

Novartis

Read biopsy language, eGFR, and autoantibody panels out of notes for IgAN, dcSSc, and cGvHD studies.

CRO operations

IQVIA

Pre-screen site EHR dumps against a live CT.gov index so feasibility is a retrieval problem, not a spreadsheet.

Oncology RWD

Flatiron Health

Turn unstructured community-oncology notes into trial-ready phenotypes sitting next to the EHR chart.

How it works

A four-stage RAG loop

01

Ingest the note

Unstructured H&P, pathology, and labs. No template required.

02

Extract phenotype

ICD-10, biomarkers, ECOG, meds, and lab bounds via clinical NER.

03

Embed with BioBERT

Patient vector lands in the same space as protocol eligibility text.

04

Retrieve + adjudicate

pgvector ANN, then inclusion/exclusion scoring against CT.gov criteria.

Full architecture

Live demo

Eight synthetic notes. One matching pass. Ranked NCT IDs.

Built with React, a BioBERT-compatible encoder, and pgvector-style retrieval over a ClinicalTrials.gov-backed corpus.

Open the matching studio